FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509215
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24640.4838820537493986No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22710.44598057794841084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19460.38215684926799093No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA17620.34602279979969164No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14950.29358915192993135No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14760.2898579185609222No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13340.26197185864516953No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11390.22367762143691763No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10930.21464410906984283No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9700.19048928252309927No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9430.18518700352503364No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9130.1792955824160718No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8570.16829826301267636No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7520.14767828913130995No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7420.14571448209498933No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7050.13844839606060308No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7050.13844839606060308No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6430.1262727924354153No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6260.12293432047367026No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6150.12077413273371758No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6140.12057775203008553No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5970.11723928006834047No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5810.11409718881022751No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5580.1095804326266901No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5460.10722386418310537No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.10624196066494507No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5250.10309986940683208No Hit
GCAACCGTCGTCTTTACGCGGACGGGACCATGCAGTCATCAGGC5170.10152882377777558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)