FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485359
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23770.48974058377407237No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22560.4648105835062294No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18750.38631198762153374No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA17130.35293463189103325No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14400.2966876064933379No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13990.2882402510306804No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG11150.22972686197227205No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10270.2115959526865681No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10120.20850545678559582No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9180.18913834913950292No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8750.18027892755671576No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8500.1751281010550953No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8080.16647471253237295No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6980.14381107592524298No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6930.14278091062491888No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6890.1419567783846596No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6880.14175074532459478No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6510.1341275221021965No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5650.11640867893662216No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5650.11640867893662216No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5520.11373024915577953No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5470.11270008385545545No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5270.10857942265415908No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5240.10796132347396462No Hit
GCAACCGTCGTCTTTACGCGGACGGGACCATGCAGTCATCAGGC5180.10672512511357574No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5180.10672512511357574No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5060.10425272839279791No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4900.10095619943176082No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA4870.10033810025156636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)