FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485359
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50701.0445876145286273No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44710.9211738115498013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22230.45801149252409046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18420.37951289663939475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17860.3679750452757649No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC17300.35643719391213513No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14520.29916000321411573No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12060.2484758704381705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12020.24765173819791125No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10080.20768132454533653No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8430.17368586963464158No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8420.17347983657457675No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8390.1728617373943823No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.16008768767036358No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7490.15431876198854869No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7280.14999206772718748No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6870.14154471226452997No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6570.13536372046258544No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6350.13083099314115942No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6030.12423793521908524No Hit
GTTACCCTGGATGCAGGTAACCGTTTCTCTA5940.12238363767850188No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5730.11805694341714072No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5510.11352421609571473No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5420.11166991855513135No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5340.11002165407461283No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.10857942265415908No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5250.10816735653402945No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5080.10466479451292754No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA4920.10136826555189045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)