FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491301
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23910.48666703304084463No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21740.442498590477121No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18870.3840822632154219No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA17650.35925023559895053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14890.3030728616469333No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14140.2878072708991026No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12390.25218755915416413No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11150.2269484491177506No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10430.21229348199983308No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10090.2053730808608165No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9330.18990394890301465No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8640.17585960541501036No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8630.17565606420503926No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7500.1526559074783076No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7190.1463461299692042No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6960.14166468213986944No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6900.140443434880043No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6380.129859291961547No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6060.12334597324247254No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5490.11174412427412116No Hit
GCAACCGTCGTCTTTACGCGGACGGGACCATGCAGTCATCAGGC5480.11154058306415007No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5480.11154058306415007No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5480.11154058306415007No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5380.10950517096443932No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5310.10808038249464177No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5250.1068591352348153No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4950.10075289893568301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)