FastQCFastQC Report
Wed 31 May 2023
EGAF00007924359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507191
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26010.5128245572180895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23950.47220869455491127No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22600.44559150300379935No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20910.4122707224694444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20460.4033983252857405No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18180.35844484622164036No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17360.34227736690911315No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15910.31368853153940035No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13100.25828534023671557No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12350.24349801159720894No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12100.23856890205070672No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11600.2287106829577023No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10930.21550066937307644No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10910.21510634060935624No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10440.2058396146619321No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10310.20327647769775095No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9070.1788280943471No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8810.17370182041873772No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8720.17192734098199694No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8140.1604918068341118No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC7710.15201373841412802No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7640.15063358774110738No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7610.15004209459552714No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7550.1488591083043666No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7490.14767612201320607No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7280.14353566999414422No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7280.14353566999414422No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6970.1374235741564815No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6660.13131147831881876No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6640.13091714955509856No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6560.12933983450021785No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6390.12598804000859637No Hit
TACCAGCTCCTGGCCCGGTTTGATCATGTTTTTATCCGCCAGTT6310.12441072495371568No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6310.12441072495371568No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6160.12145325922581433No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6110.1204674373165139No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6050.11928445102535336No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6030.11889012226163319No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5660.11159504013280994No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5660.11159504013280994No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5660.11159504013280994No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5530.10903190316862879No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5510.10863757440490861No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5290.10429995800398666No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5170.10193398542166561No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5150.10153965665794544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)