FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537742
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28160.5236712029188718No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25530.4747629904303551No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24520.4559807491324836No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22840.4247390012310736No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22120.411349680701898No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20440.38010793280048794No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17310.3219015810555992No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16180.3008877863361984No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14340.2666706338727494No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13900.25848827132714197No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12880.23952006724414313No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11950.22222552822729114No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11800.21943608645037957No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11790.21925012366525212No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11450.21292738897091915No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10410.19358725931766535No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9790.18205756663976405No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9590.17833831093721525No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9200.1710857623172451No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8470.15751047900294193No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8310.1545350744409029No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC7840.1457948235399132No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7770.14449308404402111No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7750.14412115847376622No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7710.1433773073332565No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7710.1433773073332565No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7550.14040190277121742No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7320.1361247587132863No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT7270.1351949447876491No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6900.1283143217379338No Hit
TACCAGCTCCTGGCCCGGTTTGATCATGTTTTTATCCGCCAGTT6870.1277564333825515No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6800.1264546938866594No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6690.12440910325025756No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6660.12385121489487524No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6450.119945996407199No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6130.1139951872831209No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6070.11287941057235626No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6070.11287941057235626No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6040.11232152221697393No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5970.11101978272108186No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5870.10916015486980746No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5860.10897419208468001No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5510.1024654946052196No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5400.10041990396881775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)