FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485034
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG34870.7189186737424593No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT34770.7168569626046833No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22910.4723380216644606No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18370.3787363360094344No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG16700.3443057600085767No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG14490.2987419438637291No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13830.2851346503544081No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13460.2775063191446373No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12490.25750772110821096No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12270.25297195660510396No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12200.2515287588086608No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12130.2500855610122177No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10580.21812903837669112No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG9050.1865848579687197No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9010.18576017351360935No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8970.184935489058499No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8940.1843169757171662No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8480.17483310448339703No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8040.16576157547718304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7850.16184432431540882No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7640.1575147309260794No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7620.15710238869852425No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT7620.15710238869852425No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7300.15050491305764133No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7280.15009257083008612No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7020.1447321218718688No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6950.14328892407542565No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6840.14102104182387215No Hit
GCGAGAGTCGCTCATCGCTTTGATCATTTCATCACGAGTCTGAA6760.1393716729136514No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6750.13916550179987383No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6730.13875315957231865No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6670.13751613288965311No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6560.13524825063809962No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6520.13442356618298923No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6330.13050631502121499No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5980.12329032603899932No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5720.11792987708078198No Hit
GTACTGGGATGCCGGCGGCCAGTCCGGGGAAGAAGTTTTGGCAG5710.11772370596700436No Hit
GATCAGCGGGTTGAATGCCTGTTTAACTTTCTTCGGGTGTTTCT5640.11628050817056124No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5600.11545582371545086No Hit
CGGGCGTTCCAGAGCGGTGTTAGAGCTGTGAGACGGGATTGCCG5440.11215708589500942No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5340.11009537475723352No Hit
GTCCTTCAGGGATTCGGAGAACACTTCCTGTGCGCGTTCCGGAT5160.10638429470923687No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5150.10617812359545928No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5150.10617812359545928No Hit
GATTGCCGGGGATGGAGTTTCCGGGCGCGCCGGGGACTCCCAGG5080.10473492579901615No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4900.10102384575101953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)