FastQCFastQC Report
Sun 21 May 2023
EGAF00007924369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490755
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT37200.7580157104869029No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG34220.6972929465823069No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23180.4723334454055486No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA19170.39062261209768623No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG17840.3635215127711383No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG14440.2942405069739483No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13940.2840521237684792No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13490.27488257888355694No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12640.25756232743425944No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12380.25226436816741554No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12330.2512455298468686No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12190.24839278254933725No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10880.22169921855100813No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9290.18930015995761634No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9210.18767001864474125No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9130.1860398773318662No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8890.18114945339324104No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG8080.16464427260038103No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7900.16097645464641216No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT7790.15873501034120896No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7780.15853124267709956No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7720.15730863669244327No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7650.1558822630436776No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7630.15547472771545884No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7290.14854662713573982No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT7280.14834285947163045No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7280.14834285947163045No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7200.1467127181587554No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7020.1430449002047865No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6860.1397846175790364No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6760.13774694093794257No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6760.13774694093794257No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6710.13672810261739562No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6620.1348941936404112No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6470.13183767867877047No Hit
GCGAGAGTCGCTCATCGCTTTGATCATTTCATCACGAGTCTGAA6450.1314301433505517No Hit
GTACTGGGATGCCGGCGGCCAGTCCGGGGAAGAAGTTTTGGCAG6080.12389073977850454No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT6060.1234832044502858No Hit
CGGGCGTTCCAGAGCGGTGTTAGAGCTGTGAGACGGGATTGCCG6010.12246436612973886No Hit
GATCAGCGGGTTGAATGCCTGTTTAACTTTCTTCGGGTGTTTCT5680.11574003321412926No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5440.11084960927550407No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5370.10942323562673839No Hit
GTCCTTCAGGGATTCGGAGAACACTTCCTGTGCGCGTTCCGGAT5340.10881193263441023No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5070.10331020570345693No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4950.10086499373414433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)