FastQCFastQC Report
Wed 31 May 2023
EGAF00007924370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490755
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42590.86784648144186No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG36880.7514951452354025No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA34750.7080926327801041No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22690.46234882986418885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19580.3989770863261709No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18010.36698556306099783No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG17470.3559821091990912No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16730.3409033020549969No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16690.34008823139855937No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG14200.2893500830353231No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC13420.27345620523479125No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12970.2642866603498691No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12940.26367535735754094No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA12050.2455400352518059No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11890.24227975262605578No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11490.2341290460616805No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10180.20743548206335138No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9490.19337551323980398No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9380.19113406893460078No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8810.17951931208036598No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG8740.1780929384316003No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8430.17177614084420945No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8260.16831209055434992No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8050.1640329696080529No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG7860.16016138398997462No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7730.15751240435655267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.1513993744332712No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC7370.15017676844861488No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7340.14956546545628674No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7230.14732402115108353No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.14691648582286476No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7190.146508950494646No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7080.14426750618944278No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6930.14121099122780206No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6920.14100722356369266No Hit
AAAGCCATTATCAACCTGGCAGGCTCTTCCT6860.1397846175790364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6300.12837362838891098No Hit
AGCGGTTTCCGTAAAACCAACATGTCTCTGG6030.12287190145795764No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5900.12022292182453567No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5800.11818524518344184No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5690.11594380087823863No Hit
TCTGAAAACACCCAACAGACCAGCACGAAAC5510.11227598292426974No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5410.11023830628317594No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5360.109219467962629No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5250.1069780236574258No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4960.1010687613982537No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4940.10066122607003494No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4910.1000499230777068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)