FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482286
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39520.8194307941760699No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26240.5440755070642731No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14960.31018938969822885No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14440.2994074055643332No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12500.2591823109109533No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12460.2583529275160382No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.23492284660968804No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9840.2040283151491024No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9360.19407571441012178No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9170.1901361432842753No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8280.17168236274741544No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7500.15550938654657195No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7330.15198450711818298No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7100.14721555259742145No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.13788498940462715No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6610.1370556060097121No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6470.13415276412750943No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5910.12254139659869871No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.11507694604446324No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG5330.11051533737243048No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5180.10740514964149903No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5170.10719780379277026No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5040.10450230775929635No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4830.10014804493599233No Hit

[OK]Adapter Content

Adapter graph