FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488312
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36720.7519782434181426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26140.5353134880977736No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15050.30820459050770815No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14200.2907976867248808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13690.2803535444551844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12940.2649945117056308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11570.23693867854977962No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9740.19946263864086897No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.19864349022755942No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8830.1808270122380773No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8580.17570733465489277No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7560.15481905011549993No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7330.15010894673897018No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6680.1367977850226904No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6600.13515948819607138No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6400.13106374612952373No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.12471534592637494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5980.12246268778977375No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5440.11140418421009518No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG5160.10567014531692853No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5030.10300791297367257No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5030.10300791297367257No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4930.10096004194039877No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4900.10034568063041663No Hit

[OK]Adapter Content

Adapter graph