FastQCFastQC Report
Wed 31 May 2023
EGAF00007924376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463981
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41200.8879673952166144No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35520.7655485892741297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23970.5166159821199575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14100.3038917541882103No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13140.28320125177539596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12900.2780286261721924No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11990.25841575409337886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10340.2228539530713542No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8250.17780900511012304No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8110.17479164017492096No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7600.16379981076811334No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7370.1588427112317099No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6930.14935956429250336No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6670.14375588655569949No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6410.1381522088188956No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6300.13578142208409397No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5900.127160379412088No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5700.12284985807608502No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA5270.1135822372036786No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5240.11293565900327815No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5100.10991829406807607No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG5050.10884066373407532No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4680.1008661992624698No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4670.10065067319566966No Hit

[OK]Adapter Content

Adapter graph