FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500092
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48380.9674219943530391No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC42580.8514433344264655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41610.83204690336978No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT38730.7744574998200331No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA28780.5754941090839285No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA26050.5209041536357311No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21440.4287211153147821No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19640.3927277380961903No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19260.3851291362389321No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG15700.3139422346288283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15220.30434400070387047No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14850.2969453620533822No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13890.2777488942034666No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13800.27594922534253696No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13160.2631515801092599No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT11650.2329571358869968No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9980.19956328035641444No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9530.19056493605176647No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC9470.18936515681114674No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9430.18856530398406693No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9150.1829663341945082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.1825664077809683No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA7670.15337177959255496No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.14477336170144695No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7190.14377354566759717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.1431736560472873No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7070.1413739871863577No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7060.14117402397958775No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6820.13637490701710886No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6490.12977612119370036No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6200.12397718819737169No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5960.11917807123489278No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5830.11657854954688339No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5690.11377906465210401No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5610.11217935899794439No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5490.10977980051670491No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5070.10138134583236684No Hit
ATGGCTTCCGAAAACAAACAGCGTCCGGGCT5060.1011813826255969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)