FastQCFastQC Report
Sun 21 May 2023
EGAF00007924379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474284
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT36190.7630449266684097No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27920.5886768265427466No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25430.5361766367830245No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT23220.48958008281957643No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22480.4739776167865667No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19100.4027122989601167No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17720.3736158082499093No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16050.3384048376078468No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15550.32786263082878614No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14420.30403724350810907No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13150.277260038289295No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13010.27430822039115804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12360.2606033515783792No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12160.256386468866755No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11520.2428924441895573No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11360.2395189380202579No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10380.21885621273329903No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9830.20725978527633232No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9180.19355491646355347No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA8810.18575368344704862No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8680.18301270968449282No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8630.1819584890065868No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT7560.15939816649939698No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6900.14548245355103692No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6780.14295232392406237No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6760.14253063565289995No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6580.1387354412124381No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6550.13810290880569448No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6390.13472940263639507No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6050.12756070202663383No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5530.11659680697641076No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5370.11322330080711135No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5320.11216908012920529No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5240.11048232704455559No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5130.10816304155316224No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5040.10626544433293132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)