FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474284
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44560.9395214681498849No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44030.9283467289640807No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39670.8364186858506718No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39670.8364186858506718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36330.7659967445665467No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26690.5627429978662574No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA23630.49822469237840616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19760.41662801190847676No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17840.3761459378768839No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17180.3622302249285238No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG15030.31689873577856303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14940.3150011385583321No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13010.27430822039115804No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12250.2582840660869859No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12220.2576515336802422No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12200.2572298454090798No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10430.2199104334112051No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9070.19123563097216015No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8640.182169333142168No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG8550.18027173592193707No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8400.17710907388821887No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC8320.17542232080356915No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6930.14611498595778058No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6890.14527160941545572No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6860.1446390770087121No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6770.14274147978848117No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6640.1400005060259254No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6580.1387354412124381No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6390.13472940263639507No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6340.13367518195848901No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5860.12355466345059078No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5730.12081368968803502No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5410.11406667734943621No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5400.11385583321385499No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5330.11237992426478649No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5300.11174739185804286No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5150.10858472982432467No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4830.10183771748572584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)