FastQCFastQC Report
Wed 31 May 2023
EGAF00007924383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437164
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28440.6505567704568538No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27860.6372894382886056No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21340.4881463249489894No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA18450.42203841121409813No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18420.4213521698950508No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15890.3634791519887273No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15450.3534142793093667No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14500.3316833042062018No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13990.32001720178239745No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13250.30308991591256373No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12260.2804439523840024No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11100.2539092880475062No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10460.23926947324116352No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10190.2330933013697377No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9990.2285183592427556No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9610.2198259692014896No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8890.20335617754435406No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8260.18894510984436047No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7940.1816252024411891No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7940.1816252024411891No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC7810.17865149005865077No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7800.17842274295230165No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7370.16858661737929015No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6460.14777063070152163No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6380.1459406538507288No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.1363332753840664No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5560.1271833911301022No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5540.126725896917404No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5310.1214647134713746No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5250.12009223083327995No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5210.11917724240788355No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4940.11300107053645772No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4870.11139984079201398No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4650.10636740445233367No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4640.10613865734598457No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4600.10522366892058817No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4440.10156371521900247No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4410.10087747389995518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)