FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444005
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29490.6641817096654317No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28070.6322000878368487No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21170.4767964324726073No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA18720.42161687368385486No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18380.4139593022601097No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15780.355401403137352No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15220.34278893255706583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14880.3351313611333206No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14460.3256720081981059No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13010.2930147183027218No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12790.2880598191461808No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11030.24842062589385255No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10520.2369342687582347No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10260.23107847884595895No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10140.22837580657875475No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10090.2272496931340863No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9670.21779034019887164No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG8550.1925653990382991No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8090.18220515534734968No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7900.1779259242576097No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC7850.1767998108129413No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7210.16238555872118557No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7080.1594576637650477No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6720.15134964696343509No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6540.14729563856262878No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6450.14526863436222565No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6000.1351336133602099No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5510.12409770160245943No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5360.12071936126845419No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5240.11801668900124998No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5210.11734102093444894No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5190.11689057555658157No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5040.11351223522257632No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4880.10990867219963739No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4680.10540421842096372No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4660.10495377304309636No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4600.10360243690949425No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4550.10247632346482584No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4530.10202587808695847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)