FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476165
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42260.8875074816502684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.3057763590352084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9820.2062310333602848No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8910.18712001092058425No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8820.1852299098001743No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8420.17682946037613012No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.16506883118246826No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7660.16086860647044615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.14679785368517215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5960.1251666964182584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5870.12327659529784843No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5510.11571619081620867No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4910.1031155166801424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)