FastQCFastQC Report
Wed 31 May 2023
EGAF00007924389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427043
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC35120.8223996178370796No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31470.7369281313591372No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25900.6064963013092358No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25730.6025154375554687No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21550.5046330229040167No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA21240.49737380076479415No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20790.48683622024011636No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19920.4664635645590725No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16750.3922321639741197No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16650.3898904794130802No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16390.38380209955437744No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16170.37865039352009044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15550.36413194924164544No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15380.3601510854878783No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14090.3299433546504684No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13060.3058240036717614No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11670.273274588273312No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11410.26718620841460927No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC11400.2669520399585053No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10930.25594612252161963No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10230.23955433059434295No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT10100.23651014066499157No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9640.22573839168420978No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9060.21215662123018056No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8950.20958076821303706No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8640.20232154607381456No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8220.19248647091744858No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8180.19154979709303277No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7710.18054387965614704No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6760.1582978763262716No Hit
TTCAGACGGTGGGGTGTCCTCGGACTGGCCCCAGTCGCTCGGGC6300.14752612734548978No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6180.14471610587224237No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6050.141671915942891No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6030.1412035790306831No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6010.14073524211847518No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5910.13839355755743565No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5840.136754378364708No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5380.1259826293839262No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5370.12574846092782227No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4910.11497671194704046No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4860.1138058696665207No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4860.1138058696665207No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4730.11076167973716933No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4690.10982500591275351No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4560.10678081598340214No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4470.10467329987846657No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4340.1016291099491152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)