FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514276
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22940.44606398120853397No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20840.4052298765643351No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20450.39764639998755535No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14490.28175532204497195No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10160.19755928723098104No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10110.1965870466442144No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9890.19230918806244118No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5640.10966873818727688No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5630.10947429006992354No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5520.10733536077903695No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5470.10636312019227029No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5360.1042241909013837No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5340.10383529466667704No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5290.10286305407991041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)