FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514276
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47570.9249896942497803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22580.4390638489838141No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20810.4046465322122751No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18710.3638124275680763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10360.20144824957804758No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9610.18686464077654802No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6020.11705776664670334No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5930.11530773359052338No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5780.11239101183022346No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5450.10597422395756365No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5420.10539087960550367No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5400.105001983370797No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5320.10344639843197038No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5210.10130746914108378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)