FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488998
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21010.4296541090147608No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19960.408181628554718No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19900.406954629671287No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14090.2881402377923836No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9410.19243432488476434No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9240.18895782804837646No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9180.18773082916494546No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5560.11370189653127415No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5380.1100208998809811No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5260.10756690211411908No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5120.10470390471944671No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5070.10368140564992086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)