FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488998
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45670.9339506501049083No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA44970.9196356631315467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20730.4239281142254161No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19810.4051141313461405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17780.3636006691233911No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9310.19038932674571266No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5590.11431539597298968No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5590.11431539597298968No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5360.10961190025317077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5290.10818040155583458No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5140.10511290434725704No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5020.102658906580395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)