FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405614
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34890.8601774100499491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27770.684641062685213No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22080.544359908681653No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14680.3619204465329106No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12400.30570936900600076No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12340.3042301301237137No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11530.28426040521283785No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11350.27982268856597653No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9930.24481403501851515No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9510.23445936284250546No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8640.21301039904934246No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8240.20314880650076178No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7020.17307094922759078No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6980.1720847899727327No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6560.161730117796723No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6490.16000433910072137No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5850.1442257910229923No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5830.14373271139556326No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5060.12474914573954547No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4780.11784603095553901No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4770.1175994911418245No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4720.1163667920732519No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4420.1089705976618164No Hit
CCGAAAGGCTCTAACTATTGGCGTAACCGTG4400.10847751803438738No Hit

[OK]Adapter Content

Adapter graph