FastQCFastQC Report
Wed 31 May 2023
EGAF00007924405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451204
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15020.33288711979503727No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13890.30784301557610305No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13840.30673486937172545No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12620.27969610198491146No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12530.27770143881703174No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11180.24778149129883598No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11070.24534356964920523No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10350.2293862643061675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10200.22606182569303462No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9810.2174182852988892No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8380.18572530385368924No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8150.18062783131355217No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.1790764266274235No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7940.1759736172551662No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7230.16023794115300397No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7210.1597946826712529No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7170.15890816570775082No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6980.15469721013111587No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6440.14272923112383756No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6410.14206434340121096No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5890.13053962287568371No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5770.12788007198517745No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5630.1247772626129201No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5550.1230042286859159No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC5410.11990141931365857No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5240.11613372221877466No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5210.11546883449614809No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4900.10859832802900683No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG4790.10616040637937607No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4780.10593877713850056No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4560.10106293383923902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)