FastQCFastQC Report
Wed 31 May 2023
EGAF00007924406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451204
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32970.7307116071666031No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19680.43616634604303156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15810.3503958298242037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14120.3129404881162401No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13600.3014157675907128No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11950.2648469428462514No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11230.24888963750321363No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11010.24401379420395208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10610.23514862456893112No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9230.20456378932810879No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8910.197471653620092No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8880.19680676589746543No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8870.19658513665658994No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8830.19569861969308783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8600.19060114715295076No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.18705507929894238No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7800.17287080788290884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.16954636926977598No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7280.1613460873573816No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7250.16068119963475502No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.15026462531360538No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6720.14893484986835223No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6380.1413994556785844No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6230.13807501706545156No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.13076125211655926No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5640.12499889185379562No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC5630.1247772626129201No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5440.12056630703628514No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5190.11502557601439703No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5170.114582317532646No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4770.10571714789762501No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4680.10372248472974531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)