FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428208
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14100.3292792287860105No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13380.31246497029481No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13050.30475843515300977No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11700.2732317004820088No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11640.2718305122744087No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11370.2655251653402085No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10490.2449744049620745No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10340.2414714344430744No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9910.23142958562194074No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9450.22068714269700704No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8210.19172925307327282No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8010.187058625714606No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7500.1751485259500056No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7400.1728132122706722No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6880.16066958113813848No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6670.15576542241153832No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6460.15086126368493818No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6320.14759182453387137No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6270.1464241676942047No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6240.14572357359040466No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5510.12867578373127078No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5500.12844225236333745No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5150.12026865448567052No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5000.1167656839666704No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG4950.1155980271270037No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC4940.11536449575907037No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4920.11489743302320367No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4900.11443037028733699No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4720.11022680566453685No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4710.10999327429660351No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4500.10508911557000336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)