FastQCFastQC Report
Wed 31 May 2023
EGAF00007924408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428208
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40660.9495385420169637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30020.7010611665358891No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19460.4544520419982812No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14910.34819526958861113No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13040.3045249037850764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12950.30242312147367634No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11850.27673467100100885No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10490.2449744049620745No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10010.23376489930127414No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9970.2328307738295408No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8970.2094776370362067No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8810.20574113514927322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8310.19406456675260622No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7950.18565743750700595No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.1854239061390726No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7940.1854239061390726No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6960.1625378320816052No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6650.15529835967567163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6610.15436423420393827No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6540.1527295146284049No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6480.15132832642080485No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6320.14759182453387137No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6090.14222060307140455No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5880.1373164443448044No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5440.12704106415573738No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5320.1242386877405373No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.12377162500467062No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5120.11956806038187048No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC4790.11186152524007024No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4660.10882561745693682No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4640.10835855472107014No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4610.10765796061727011No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4450.10392145873033666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)