FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457589
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14700.3212489810725345No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13990.30573287382345293No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13900.30376604332709045No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13270.28999822985255325No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12160.2657406537307496No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11460.25044308320348607No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11420.2495689363162139No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10630.23230453529258788No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10310.22531136019441028No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10180.2224703828107756No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8520.1861932869889792No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8450.18466352993625285No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8240.18007425877807376No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7430.16237278431081167No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7410.16193571086717556No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7020.15341277871627157No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6740.14729375050536617No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6580.14379716295627737No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6570.1435786262344593No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6570.1435786262344593No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6290.1374595980235539No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5730.12522154160174304No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5510.12041373372174594No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5510.12041373372174594No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5360.11713568289447518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5350.11691714617265711No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC5290.11560592584174882No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG4970.1086127507435712No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4870.10642738352539069No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4790.10467908975084629No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4730.10336786941993797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)