FastQCFastQC Report
Wed 31 May 2023
EGAF00007924410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457589
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31060.6787750579668654No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20990.45870857909608836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15840.34616216735979227No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14340.3133816590870847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14250.3114148285907223No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12250.2677074842271121No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11580.25306552386530273No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11240.245635275323489No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10430.22793380085622686No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9500.20760988572714814No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9220.20149085751624274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9100.1988684168544261No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9020.19712012307988172No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8790.19209377847806655No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8330.18204108927443624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8290.18116694238716402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.1658693718599005No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7130.15581668265627013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6940.15166448494172718No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6900.15079033805445496No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6900.15079033805445496No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6860.14991619116718277No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6800.14860497083627447No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.13658545113628168No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6040.13199617997810262No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5770.12609568848901526No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5590.12216202749629035No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC5310.11604299928538492No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5240.11451324223265857No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4930.10773860385629899No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4800.10489762647266432No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4710.10293079597630188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)