FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455830
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC77211.693833227299651No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC73881.620779676633833No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT72521.590943992277823No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG55131.2094421165785492No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC38970.8549239848189017No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33790.7412851282276287No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31910.7000416822060855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18710.41046003992716584No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18470.40519491915845823No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT16950.3718491542899765No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT16860.36987473400171117No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16440.3606607726564728No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG15430.3385033894214949No Hit
CAGTTTGCGGGACAGGTTGTTACCTTCCTTCAGGAAACGAGAGC14780.32424368733957837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12900.2830002413180352No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11520.25272579689796637No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11490.2520676568018779No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10110.221793212381809No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG10080.22113507228572055No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9610.21082421078033475No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9120.20007458921089002No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8950.19634512866638876No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8700.19086062786565167No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT8610.1888862075773863No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8470.18581488712897354No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8300.18208542658447227No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7800.17111642498299806No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7350.16124432354167126No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7350.16124432354167126No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7270.15948928328543535No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7060.1548823026128162No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6890.15115284206831495No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG6820.14961718184410855No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6700.14698462145975474No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6520.143035780883224No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5940.13031173902551388No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5770.12658227848101267No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5680.12460785819274729No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5670.12438847816071781No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG5410.11868459732795121No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5020.11012877607880131No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5010.10990939604677182No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC5000.10969001601474233No Hit
AGAACTGAGCCTTCACTGGTTCAGTTCCCTCGGTCGAGTACGCT4960.1088124958866244No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4920.10793497575850647No Hit
TACAACTTTACCGGTGGACGCGTCACCGAAGGTGACTGGACGCG4730.10376675514994625No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4730.10376675514994625No Hit
GATAACGGTTTTCGCATCGTTACCACCGTTAGTGGTACCGCCCA4590.10069543470153347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)