FastQCFastQC Report
Wed 31 May 2023
EGAF00007924417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431816
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC75001.7368508809307668No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT69051.5990607110435924No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC69031.5985975508086776No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG53621.2417325898067695No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC35810.8292884006150768No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32790.7593512051429312No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29980.6942771921373918No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17420.40341256461085273No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17260.3997072827315338No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT17000.3936861996776405No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT16440.38071771310002406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15830.3665913259351205No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14930.3457491153639513No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13660.316338440446857No Hit
CAGTTTGCGGGACAGGTTGTTACCTTCCTTCAGGAAACGAGAGC13520.3130963188024529No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG11830.2739592789521463No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10940.2533486484984345No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9320.21583266947032995No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9240.21398002853067047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8980.20795894547677712No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8620.19962206124830945No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8520.1973062600737351No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8430.1952220390166182No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8120.18804305537543767No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT8050.18642199455323566No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7650.17715878985493821No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7630.17669562962002336No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7030.16280082257257722No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6920.16025344128054542No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6660.1542323582266521No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6550.1516849769346203No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6390.14797969505530134No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG6380.1477481149378439No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6180.14311651258869518No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6140.14219019211886544No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG6060.14033755117920596No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG5610.12991644589362134No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5470.12667432424921726No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5240.12134798154769624No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5170.1197269207254942No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.11926376049057932No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5130.11880060025566445No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC5130.11880060025566445No Hit
TACAACTTTACCGGTGGACGCGTCACCGAAGGTGACTGGACGCG4870.11277951720177112No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4680.10837949497007986No Hit
AGAACTGAGCCTTCACTGGTTCAGTTCCCTCGGTCGAGTACGCT4670.1081479148526224No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4560.10560053356059061No Hit
GATAACGGTTTTCGCATCGTTACCACCGTTAGTGGTACCGCCCA4530.1049057932082183No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4520.10467421309076087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)