FastQCFastQC Report
Sun 21 May 2023
EGAF00007924420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399466
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25170.6300911717142385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19030.4763859752769948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15750.39427635893918384No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8680.21729008225981686No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7610.19050432327156755No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7560.18925265229080823No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6970.17448293471784831No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5950.14894884671035832No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5690.1424401576104099No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5520.13818447627582822No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5160.12917244521436116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4260.10664236756069354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)