FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380638
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47821.2563117712892564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24580.6457579117166441No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15050.3953887946027459No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7750.20360552545988578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6860.18022372963287955No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6600.17339309264970917No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.1684014733158539No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6060.15920638506927842No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5780.15185031447201802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5020.131883837136597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4540.11927343039843631No Hit
GCACGTGGTGGTATCCCGCGTCACCTGGTGC4370.11480724467867107No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3810.1000951034841503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)