FastQCFastQC Report
Wed 31 May 2023
EGAF00007924427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370324
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13980.37750726390944145No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12590.33997256456508357No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11190.30216783141249287No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11110.3000075609466305No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9260.2500513064235642No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8500.22952873699787213No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7260.19604454477700609No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6120.16526069063846793No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5560.15013879737743166No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5450.14716842548687095No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5040.13609703934932654No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4780.12907616033527397No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4430.11962497704712631No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4180.11287413184130654No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3940.10639332044371955No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3880.10477311759432281No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3800.1026128471284605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)