FastQCFastQC Report
Wed 31 May 2023
EGAF00007924430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381672
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49911.3076673164392463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28980.7592906998679494No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13110.34348864994026285No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12760.33431847240562573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11770.30837997023622377No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.22742040285899934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8490.22244230648305352No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7410.19414575866188769No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5910.1548449977991574No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5710.14960489635079335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4850.12707246012282797No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4740.12419040432622774No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4680.12261837389171855No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4460.11685426229851811No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4200.11004213041564484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4180.10951812027080844No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4180.10951812027080844No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3930.1029679934603534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)