FastQCFastQC Report
Sun 21 May 2023
EGAF00007924431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336392
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21210.630514399866822No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15240.45304287854645775No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13410.39864206045328066No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12900.3834811767223953No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12410.36891483745154463No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11890.35345668149064186No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9250.2749768127660587No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT7440.22117053913291634No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7340.21819781683274278No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7000.2080905610121525No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4750.14120430925824634No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4720.14031249256819425No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4690.13942067587814216No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4460.13258341458774286No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG4290.12752978667744774No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3910.11623344193678804No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT3710.11028799733644082No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA3710.11028799733644082No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG3650.10850436395633667No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC3560.1058289138861804No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT3420.10166710266593736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)