FastQCFastQC Report
Wed 31 May 2023
EGAF00007924432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336392
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51341.5261956289091299No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31800.945325691455207No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21100.6272444053366311No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14940.44412471164593686No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12920.38407572118243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12190.3623748483911627No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10530.3130276582082808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7440.22117053913291634No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7240.21522509453256916No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG6960.20690147209208304No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.16914789887987824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.16171609312944424No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5280.15695973744916644No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4960.1474470260886109No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA4210.12515160883730886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4100.12188161430711787No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3860.11474708078670123No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT3790.11266617517657972No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3760.11177435848652763No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG3600.10701800280624985No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3580.10642345834621512No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC3580.10642345834621512No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3560.1058289138861804No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3400.10107255820590262No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG3380.10047801374586793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)