FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349016
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31940.9151442913791918No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31690.9079812959864304No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16260.4658812203451991No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15170.4346505604327595No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12640.36216104705801455No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11540.3306438673298645No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA10770.30858184152015955No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9890.28336809773763955No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC8290.23752492722396681No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7380.21145162399431547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.18652440002750592No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6490.185951360396085No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT6180.17706924610906088No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5930.16990625071629953No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5780.1656084534806427No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.16045109679785455No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5570.15959153735072318No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5490.15729937882503955No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5340.1530015815893827No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT4750.13609691246246589No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4720.13523735301533452No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4720.13523735301533452No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4530.1297934765168359No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4350.12463611983404771No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4300.12320352075549545No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4170.11947876315125953No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4150.11890572351983862No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC3970.11374836683705045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3920.11231576775849816No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC3890.11145620831136682No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG3570.10228757420863227No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG3560.10200105439292181No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC3530.10114149494579044No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3520.10085497513007999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)