FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007924437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335210
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30250.9024193788968109No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15040.4486739655738194No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12820.38244682437874766No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11680.3484382924137108No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11310.33740043554786553No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG9980.29772381492198924No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9660.28817756033531217No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8380.24999254198860418No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG8060.24044628740192714No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7080.2112108827302288No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6800.20285790996688643No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6110.18227379851436412No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5450.1625846484293428No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA5410.16139136660600817No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT5240.156319918856836No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5140.15333671429849943No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4690.1399122937859849No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4430.13215596193430984No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT4260.1270845141851377No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT4160.12410130962680112No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3890.11604665731929238No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3850.11485337549595777No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA3690.11008024820261925No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT3650.10888696637928463No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3640.10858864592345097No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT3630.10829032546761733No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG3630.10829032546761733No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT3550.10590376182094807No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT3550.10590376182094807No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3550.10590376182094807No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG3550.10590376182094807No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT3520.10500880045344708No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC3380.10083231407177591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)