FastQCFastQC Report
Sun 21 May 2023
EGAF00007924438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335210
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42381.2642820918230362No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30030.8958563288684706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29820.8895915992959638No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15740.46955639748217537No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12810.382148503922914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11210.3344172309895289No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA10070.30040869902449213No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9350.2789296262044689No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC8020.23925300557859253No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6920.20643775543689033No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6460.1927150144685421No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6070.1810805166910295No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5650.16855105754601593No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5640.1682527370901823No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5480.16347960979684376No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5460.16288296888517645No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5340.15930312341517258No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5120.15274007338683213No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5080.1515467915634975No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4810.14349213925598878No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT4640.13842069150681663No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4550.1357358074043137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4120.12290802780346648No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4060.12111810506846454No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4010.11962650278929626No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3970.11843322096596165No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3890.11604665731929238No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG3720.11097520957012022No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC3590.10709704364428269No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3560.10620208227678171No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG3520.10500880045344708No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG3490.10411383908594611No Hit
GAATCTCAGTCCCTGACTCTGACCGACGTCG3430.10232391635094419No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG3410.10172727543927688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)