FastQCFastQC Report
Wed 31 May 2023
EGAF00007924440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412335
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60051.4563401118022967No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29010.7035541489323002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19070.4624880255132356No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15740.3817284489553397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13100.3177028387112421No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13080.31721779620939283No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12220.2963609686298762No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10130.24567402718663223No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10030.2432488146773861No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8370.20299028702390046No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8300.2012926382674282No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8020.19450204324153902No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7120.17267513065832393No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6960.16879479064353015No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6560.15909394060654564No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6510.1578813343519226No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5590.13556937926685825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5460.1324166030048383No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5400.13096147549929063No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5390.130718954248366No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5110.12392835922247687No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5010.12150314671323076No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG4810.1166527216947385No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4510.10937708416700012No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4360.10573926540313094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)