FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374268
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27300.7294238353265574No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23950.6399157822736649No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21790.5822031271709043No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13140.3510853185417936No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9810.26211164192503766No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9720.25970694796242266No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9200.2458131606228692No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8780.23459125546399906No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7360.19665052849829534No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6830.1824895529406735No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6700.17901610610578517No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6630.17714578857930682No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6610.17661141214317014No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6550.17500828283476014No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5980.15977855440486496No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5760.15390041360736156No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5330.1424113202304231No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5040.1346628619064414No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5000.13359410903416802No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4800.1282503446728013No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4550.1215706392210929No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4490.11996750991268287No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT4400.11756281595006787No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4400.11756281595006787No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4330.11569249842358952No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4070.10874560475381279No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4070.10874560475381279No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3870.10340184039244606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)