FastQCFastQC Report
Wed 31 May 2023
EGAF00007924442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374268
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54291.4505648358929966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53851.4388085542979898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26240.7011018842113138No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13910.37165881133305545No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12520.33451964902155673No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11350.3032586275075614No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11270.30112112176301475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9560.2554319364733293No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8760.23405687902786237No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7590.20279585751386706No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7320.19558177562602203No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7240.1934442698814753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7060.18863488195624525No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6290.1680613891649834No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5880.1571066722241816No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5710.15256447251701988No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5360.14321288488462813No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4840.12931909754507465No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4810.12851753289086965No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4780.12771596823666465No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4590.12263939209336626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4480.11970032169461456No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG4350.11622687485972619No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4280.11435655733324783No Hit

[OK]Adapter Content

Adapter graph