FastQCFastQC Report
Wed 31 May 2023
EGAF00007924443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417349
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30400.7284071604340732No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27610.6615566348547619No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24650.5906327797598653No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14610.35006673072177No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11110.2662040642244261No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10820.2592554432860747No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10300.24679584712075506No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9840.23577389666681842No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8320.19935353864511474No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7770.18617511962410355No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7760.18593551200553973No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7610.18234139772708213No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7320.17539277678873078No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6820.1634123958605388No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6480.15526573682936823No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6380.15286966064372984No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5710.13681595019995255No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5630.13489908925144184No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5630.13489908925144184No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5370.128669291168782No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5030.12052263213761145No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT4990.11956420166335609No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4780.11453244167351545No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4660.11165715025074938No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4610.11045911215793018No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4600.11021950453936633No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4500.10782342835372793No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4420.10590656740521723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)