FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417349
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61671.4776601836832004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30560.7322408823310946No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15880.3804968982793777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13560.32490793077256686No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12940.3100522584216088No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12740.30526010605033194No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12490.29926991558623595No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10620.2544632909147979No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10550.2527860375848511No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8720.20893784338766835No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.20702098243915762No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8260.1979158929337317No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7610.18234139772708213No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6710.16077671205633653No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6670.15981828158208117No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6470.1550261292108044No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5620.134659481632878No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5610.13441987401431416No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5510.13202379782867577No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5280.12651282260170746No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5060.12124145499330297No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5020.1202830245190476No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5010.12004341690048377No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4840.1159700873848985No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4440.10638578264234488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)