FastQCFastQC Report
Wed 31 May 2023
EGAF00007924445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387602
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27100.6991707989122863No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26200.675951104483465No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22470.5797183709062389No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13680.352939355318084No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10040.25902859118374No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9890.2551586421122698No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8940.23064896465962506No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8470.21852312423568504No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7560.19504543320209908No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7530.19427144338780503No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7380.1904014943163348No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7020.18111361654480626No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6860.17698567086857137No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6810.17569568784474796No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6340.16356984742080793No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5870.1514440069968679No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5680.146542071506339No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5470.14112414280628066No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5210.13441623108239895No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5110.13183626503475215No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4750.1225483872632236No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT4600.1186784381917534No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4540.11713045856316531No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4460.11506648572504785No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4450.11480848912028317No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4350.11222852307263635No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4180.10784258079163678No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4010.10345663851063719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)