FastQCFastQC Report
Sun 21 May 2023
EGAF00007924448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38020.9583657871984311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20060.5056501233877045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18550.467587726263306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14670.36978501047346096No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13930.3511319151939544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12230.308280209822115No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10430.262907815898991No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9880.2490440288669253No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8040.20266335952328737No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7900.19913439555148885No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6950.1751878543142845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6700.16888613293607282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.14972889994630934No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5720.14418338513348306No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5600.14115855887194145No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5190.1308237358116743No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5170.13031959810141738No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA5100.12855511611551812No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5000.12603442756423344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4930.12426994557833418No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4810.12124511931679256No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4700.11847236191037944No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4650.1172120176347371No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4570.11519546679370936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4570.11519546679370936No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4530.1141871913731955No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4040.10183581747190062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)