FastQCFastQC Report
Sun 21 May 2023
EGAF00007924449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411420
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24680.5998736084779543No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17810.4328909630061738No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17770.4319187205288999No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14980.36410480773905013No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13780.33493753342083515No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11920.28972825822760195No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11830.2875407126537358No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11470.27879053035827134No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11120.2702834086821253No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA10700.2600748626707501No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10100.2454912255116426No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8370.20344173836954935No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8050.1956637985513587No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7820.19007340430703418No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7670.1864274950172573No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7330.17816343396042975No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7180.17451752467065285No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6670.16212143308541152No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6480.1575032813183608No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG6350.15434349326722085No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6330.15385737202858393No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6080.14778085654562248No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6070.14753779592630403No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG5930.1441349472558456No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5920.14389188663652716No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5520.13416946186378884No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5510.13392640124447036No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5420.13173885567060425No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5340.12979437071605657No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5050.1227456127558213No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT4860.11812746098877061No Hit
GGTAAAGGAGTGCAGCAGGCTGCCAGAACCGTTGTCGACAACGG4800.11666909727285986No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4680.11375236984103837No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4480.10889115745466921No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4410.10718973311943998No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4360.10597443002284769No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4290.10427300568761849No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4230.10281464197170774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)