FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376992
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22260.5904634581105169No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16650.4416539343009931No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15420.40902724726254136No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13420.35597572362278246No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12480.3310415075120957No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11570.30690306425600544No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10900.28913080383668616No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10770.28568245480010185No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10280.2726848315083609No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA9750.2586261777438248No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9190.24377175112469232No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8170.21671547406841526No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7530.1997389865036924No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7030.18647610559375263No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7030.18647610559375263No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6820.18090569561157796No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6510.17268270944741534No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6110.16207240471946355No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG6060.16074611662846958No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA5960.1580935404464816No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5820.1543799337916985No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5810.15411467617349972No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG5790.15358416093710212No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5630.14934003904592139No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5460.1448306595365419No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5370.14244334097275274No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5350.14191282573635514No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4790.12705839911722264No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4670.12387530769883712No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4560.12095747389865036No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4300.11406077582548171No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4200.11140819964349377No Hit
GGTAAAGGAGTGCAGCAGGCTGCCAGAACCGTTGTCGACAACGG4080.10822510822510822No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4060.10769459298871063No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT4050.10742933537051184No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4020.10663356251591545No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG3880.10291995586113234No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA3830.10159366777013835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)